tonyw wrote:U-Boot has no say in what sort of file systems are bootable. The program that scans all the disk partitions and makes up the list (the "AmigaOS 4.x U-Boot BootLoader" screen) is amigaboot.ub, which is written into the SD card on the mobo.
Unfortunately U-Boot can only initialise (and provide access to) the on-board SATA controller. If your shiny new system partition is on an HD or SSD that is connected to a PCI card, you won't be able to boot from it (directly, anyway).
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